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  •  » Antibody-antigen docking without the native antibody-antigen structure

#1 2017-09-22 07:56:52

JoeClark
Member
Registered: 2017-09-11
Posts: 34

Antibody-antigen docking without the native antibody-antigen structure

Hi,
    In Rosetta there are two ways to do antibody-antigen docking: (1) run snugdock.linuxgcc command locally ; (2) use the ROSIE server. Both of these way requires an native antibody-antigen  complex structure, and we need to align the antibody and antigen structure to the native complex structure to get a start docking structure. However, if we don't have a native antibody-antigen  complex structure, but know possible interacting site of the antibody on the antegen, then what is the general protocol to predict the antibody-antigen  complex structure?



I didn't find the right solution from the Internet.


References: https://www.rosettacommons.org/node/10015



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2017-09-22 07:56:52

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